Why You’ll Love This Recipe

I keep coming back to this recipe because the texture is just right—soft and chewy with a deep chocolate flavor. I also like that the ganache centers add a luxurious touch without much extra effort. These cookies look bakery-worthy, yet I can make them at home with simple ingredients and straightforward steps.

Ingredients

(Here’s a tip: Check out the full list of ingredients and measurements in the recipe card below.)

For the chocolate thumbprint cookies

  • all-purpose flour

  • cocoa powder, Dutch process

  • salt

  • baking powder

  • unsalted butter, softened

  • light brown sugar

  • granulated white sugar

  • egg yolks, at room temperature

  • vanilla bean paste or extract

For the chocolate ganache

  • semi-sweet chocolate chips

  • heavy whipping cream

  • nonpareils or sprinkles, optional

Chocolate Thumbprint CookiesDirections

I start by lining two baking sheets with parchment paper and setting them aside. In a medium bowl, I whisk together the flour, cocoa powder, salt, and baking powder, then set the mixture aside.

In a large bowl, I cream the butter, brown sugar, and granulated sugar together for about two minutes until smooth. I add the egg yolks and vanilla, mixing until the mixture looks pale and fluffy. I then add the dry ingredients and mix just until everything comes together.

I scoop the dough into about 34 portions, rolling each one into a ball and placing them on the prepared baking sheets. Using a 1/4 teaspoon, I gently press an indent into the center of each dough ball. I chill the dough for at least one hour.

When ready to bake, I preheat the oven to 350 degrees Fahrenheit and space the dough about 1 1/2 inches apart. I bake the cookies for 9 to 11 minutes, with 10 minutes usually giving me the best results. While the cookies are still warm, I gently press the centers again to redefine the indent and let them cool before transferring them to a rack.

To make the ganache, I place the chocolate chips in a bowl and heat the cream until just about boiling. I pour the cream over the chocolate, let it sit for a minute, and then stir until smooth. Once the cookies are completely cool, I fill each center with ganache and add sprinkles if I feel like decorating. I chill the cookies briefly so the ganache can set.

Servings and Timing

I usually get about 34 cookies from this recipe. Prep time is around 15 minutes, chill time is 1 hour, and baking takes about 10 minutes per batch. From start to finish, I plan for roughly 1 hour and 25 minutes.

Variations

I like swapping semi-sweet chocolate chips for dark chocolate when I want a deeper flavor. Sometimes I add a pinch of espresso powder to the dough to enhance the chocolate taste. I also enjoy topping the ganache with crushed nuts or flaky salt instead of sprinkles for a different finish.

Storage/Reheating

I store leftover cookies in an airtight container for up to three days. I usually keep them at room temperature, but I refrigerate them if my kitchen is warm. I don’t reheat these cookies, since the ganache and soft texture are best enjoyed as-is.

FAQs

Can I make the dough ahead of time?

I often prepare the dough a day in advance and keep it chilled until I’m ready to bake.

Why did my cookies spread too much?

When this happens, I usually find that the dough wasn’t chilled long enough or the butter was too soft.

Can I freeze these cookies?

I freeze the baked cookies without ganache, then add fresh ganache after thawing for best results.

What if I don’t have Dutch process cocoa powder?

I can use natural cocoa powder, though the flavor will be slightly lighter and less rich.

How do I get perfectly round cookies?

I gently swirl a round cookie cutter around the cookies while they’re still hot to shape them neatly.

Chocolate Thumbprint CookiesConclusion

I find these chocolate thumbprint cookies incredibly satisfying to make and even better to eat. With their rich chocolate base and silky ganache centers, they’re a reliable treat that always feels special, whether I’m baking for guests or just for myself.

Print

Chocolate Thumbprint Cookies

Chocolate Thumbprint Cookies

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Rich and chewy chocolate thumbprint cookies filled with smooth chocolate ganache, perfect for holidays, cookie trays, and chocolate lovers.

  • Author: Ella
  • Prep Time: 15 minutes
  • Cook Time: 10 minutes
  • Total Time: 1 hour 25 minutes
  • Yield: 34 cookies
  • Category: Dessert, Cookies
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Ingredients

For the Chocolate Cookies:

1 1/2 cups (188g) all-purpose flour, spooned and leveled

1/2 cup (40g) Dutch-process cocoa powder

1/2 teaspoon salt

1/2 teaspoon baking powder

3/4 cup (168g) unsalted butter, softened

3/4 cup (165g) light brown sugar, packed

1/4 cup (50g) granulated sugar

2 egg yolks, room temperature

1 1/2 teaspoons vanilla bean paste or extract

For the Ganache Filling:

1 cup (200g) semi-sweet chocolate chips

1/2 cup (120ml) heavy whipping cream

Optional: sprinkles or nonpareils for garnish

Instructions

Make the Cookie Dough:

Line two baking sheets with parchment paper.

In a medium bowl, whisk together flour, cocoa powder, salt, and baking powder. Set aside.

In a large mixing bowl, cream the butter, brown sugar, and granulated sugar together for 2 minutes.

Add egg yolks and vanilla, mixing for another 1–2 minutes until pale and fluffy.

Add dry ingredients and mix just until combined.

Scoop dough into 34 1-tablespoon portions. Roll into balls and place on prepared baking sheets.

Press a 1/4 tsp measurement into each ball to create a thumbprint indent.

Chill the indented dough for at least 1 hour.

Bake the Cookies:

Preheat oven to 350°F (175°C).

Arrange chilled cookie dough 1.5 inches apart on baking sheets.

Bake for 9–11 minutes (10 minutes is ideal).

Re-press centers gently with a 1/4 tsp if needed. Optionally use a round cutter to reshape cookies while warm.

Let cool on the baking sheet for 5 minutes, then transfer to wire racks.

Make the Ganache:

Place chocolate chips in a heat-safe bowl.

Heat heavy cream until just boiling, then pour over chocolate. Let sit 1 minute.

Stir until smooth and glossy.

Assemble:

Spoon ~1 teaspoon of ganache into the center of each cooled cookie.

Garnish with sprinkles if desired.

Chill for 10–15 minutes to set the ganache.

Store in an airtight container for up to 3 days.

Notes

Flour accuracy matters! Spoon and level or weigh for precision (1 cup = 125g).

Cookies will spread slightly—reshaping while warm keeps them picture-perfect.

Chill time is important for preventing excess spread and achieving clean centers.

These freeze well before baking and after filling.

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